SCIENTIFIC BACKGROUND

638 DNA-based genes, 22 RNA-based genes  
 
DNA: ABL1, ABL2, ACVR1, ACVR1B, ADARB2, AGO1, AGO2, AJUBA, AKT1, AKT2, AKT3, ALB, ALK, ALOX12B, AMER1, ANKRD11, ANKRD26, APC, APLNR, AR, ARAF, ARFRP1, ARHGAP35, ARID1A, ARID1B, ARID2, ARID5B, ASXL1, ASXL2, ATM, ATR, ATRX, ATXN7, AURKA, AURKB, AXIN1, AXIN2, AXL, B2M, BABAM1, BAP1, BARD1, BBC3, BCL10, BCL2, BCL2L1, BCL2L11, BCL2L2, BCL6, BCOR, BCORL1, BCR, BIRC3, BLM, BMPR1A, BRAF, BRCA1, BRCA2, BRD4, BRIP1, BTG1, BTG2, BTK, CALR, CARD11, CARM1, CASP8, CBFB, CBL, CCNB3, CCND1, CCND2, CCND3, CCNE1, CD276, CD70, CD74, CD79A, CD79B, CDC42, CDC73, CDH1, CDH4, CDK12, CDK4, CDK6, CDK7, CDK8, CDKN1A, CDKN1B, CDKN2A, CDKN2B, CDKN2C, CEBPA, CENPA, CHD2, CHD4, CHEK1, CHEK2, CIC, CMTR2, CNTN4, CREBBP, CRKL, CRLF2, CSDE1, CSF1R, CSF3R, CSNK1A1, CTCF, CTLA4, CTNNA1, CTNNB1, CTR9, CUL3, CUL4A, CUX1, CXCR4, CYLD, CYP17A1, CYP19A1, CYP2C19, CYP2D6, CYSLTR2, DAXX, DCUN1D1, DDR1, DDR2, DDX41, DHX15, DICER1, DIS3, DNAJB1, DNMT1, DNMT3A, DNMT3B, DOT1L, DPYD, DROSHA, DUSP4, E2F3, EED, EGFL7, EGFR, EIF1AX, EIF4A2, EIF4E, ELF3, EML4, EMSY, EP300, EPAS1, EPCAM, EPHA3, EPHA5, EPHA7, EPHB1, EPHB4, ERBB2, ERBB3, ERBB4, ERCC1, ERCC2, ERCC3, ERCC4, ERCC5, ERF, ERG, ERRFI1, ESR1, ETAA1, ETS1, ETV1, ETV4, ETV5, ETV6, EWSR1, EZH1, EZH2, EZR, FAM175A, FAM46C, FAM58A, FANCA, FANCC, FANCD2, FANCE, FANCF, FANCG, FANCI, FANCL, FAS, FAT1, FBXW7, FGF1, FGF10, FGF12, FGF14, FGF19, FGF2, FGF23, FGF3, FGF4, FGF5, FGF6, FGF7, FGF8, FGF9, FGFR1, FGFR2, FGFR3, FGFR4, FH, FLCN, FLI1, FLT1, FLT3, FLT4, FOXA1, FOXF1, FOXL2, FOXO1, FOXP1, FRS2, FUBP1, FYN, GAB1, GAB2, GABRA6, GATA1, GATA2, GATA3, GATA4, GATA6, GEN1, GID4, GLI1, GNA11, GNA13, GNAQ, GNAS, GNB1, GPR124, GPS2, GREM1, GRIN2A, GRM3, GSK3B, H3F3A, H3F3B, H3F3C, HDAC1, HGF, HIST1H1C, HIST1H2BD, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J, HIST2H3A, HIST2H3C, HIST2H3D, HIST3H3, HLA-A, HLA-B, HLA-C, HNF1A, HNRNPK, HOXB13, HRAS, HSD3B1, HSP90AA1, ICOSLG, ID3, IDH1, IDH2, IFNGR1, IGF1, IGF1R, IGF2, IKBKE, IKZF1, IL10, IL7R, INHA, INHBA, INPP4A, INPP4B, INPPL1, INSR, IRF2, IRF4, IRS1, IRS2, JAK1, JAK2, JAK3, JUN, KAT6A, KBTBD4, KDM5A, KDM5C, KDM6A, KDR, KEAP1, KEL, KIF5B, KIT, KLF4, KLF5, KLHL6, KMT2A, KMT2B, KMT2C, KMT2D, KMT5A, KNSTRN, KRAS, LAMP1, LATS1, LATS2, LMO1, LRP1B, LTK, LYN, LZTR1, MAD2L2, MAGI2, MALT1, MAP2K1, MAP2K2, MAP2K4, MAP3K1, MAP3K13, MAP3K14, MAP3K4, MAPK1, MAPK3, MAPKAP1, MAX, MCL1, MDC1, MDM2, MDM4, MED12, MEF2B, MEN1, MET, MGA, MITF, MLH1, MLLT1, MLLT3, MPL, MRE11A, MSH2, MSH3, MSH6, MSI1, MSI2, MST1, MST1R, MTAP, MTOR, MUTYH, MYB, MYC, MYCL, MYCN, MYD88, MYOD1, NAB2, NADK, NBN, NCOA3, NCOR1, NEGR1, NF1, NF2, NFE2L2, NFKBIA, NKX2-1, NKX3-1, NOTCH1, NOTCH2, NOTCH3, NOTCH4, NPM1, NRAS, NRG1, NSD1, NT5C2, NTHL1, NTRK1, NTRK2, NTRK3, NUF2, NUP93, NUTM1, OPCML, P2RY8, PAK1, PAK3, PAK7, PALB2, PARK2, PARP1, PARP2, PARP3, PAX3, PAX5, PAX7, PAX8, PBRM1, PD-1, PD-L1, PD-L2, PDGFRA, PDGFRB, PDK1, PDPK1, PGBD5, PGR, PHF6, PHOX2B, PIGA, PIK3C2B, PIK3C2G, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIM1, PLCG2, PLK2, PMAIP1, PMS1, PMS2, PNRC1, POLD1, POLE, POT1, PPARG, PPM1D, PPP2R1A, PPP2R2A, PPP4R2, PPP6C, PRDM1, PRDM14, PREX2, PRKAR1A, PRKCI, PRKD1, PRKDC, PRSS8, PTCH1, PTEN, PTP4A1, PTPN11, PTPRD, PTPRN2, PTPRS, PTPRT, QKI, RAB35, RAC1, RAC2, RAD21, RAD50, RAD51, RAD51B, RAD51C, RAD51D, RAD52, RAD54L, RAF1, RANBP2, RARA, RASA1, RB1, RBM10, RECQL, RECQL4, REL, REST, RET, RFWD2, RHEB, RHOA, RICTOR, RIT1, RNF43, ROS1, RPS6KA4, RPS6KB1, RPS6KB2, RPTOR, RRAGC, RRAS, RRAS2, RSPO2, RTEL1, RUNX1, RUNX1T1, RXRA, RYBP, SCG5, SDC4, SDHA, SDHAF2, SDHB, SDHC, SDHD, SERPINB3, SERPINB4, SESN1, SESN2, SESN3, SETBP1, SETD2, SETDB1, SF3B1, SGK1, SH2B3, SH2D1A, SHOC2, SHQ1, SLC34A2, SLFN11, SLIT2, SLX4, SMAD2, SMAD3, SMAD4, SMARCA2, SMARCA4, SMARCB1, SMARCD1, SMARCE1, SMC1A, SMC3, SMO, SMYD3, SNCAIP, SNTG2, SOCS1, SOS1, SOX10, SOX17, SOX2, SOX9, SPEN, SPOP, SPRED1, SPRTN, SPTA1, SRC, SRSF2, STAG1, STAG2, STAT3, STAT4, STAT5A, STAT5B, STK11, STK19, STK40, SUFU, SUZ12, SYK, TAF1, TAP1, TAP2, TBX3, TCEB1, TCF3, TCF7L2, TEK, TERT, TET1, TET2, TFE3, TFRC, TGFBR1, TGFBR2, TIPARP, TMEM127, TMPRSS2, TNFAIP3, TNFRSF14, TOP1, TOP2A, TP53, TP53BP1, TP63, TPMT, TRAF2, TRAF7, TRIP13, TSC1, TSC2, TSHR, TYRO3, U2AF1, UGT1A1, UPF1, USP8, VEGFA, VHL, VTCN1, WHSC1, WHSC1L1, WISP3, WT1, WWTR1, XIAP, XPO1, XRCC2, YAP1, YES1, ZBTB2, ZBTB7A, ZFHX3, ZNF217, ZNF703, ZNRF3, ZRSR2  
 
RNA: ALK, ROS1, RET, FGFR1, FGFR2, FGFR3, NTRK1, NTRK2, NTRK3, BRAF, NRG1, EWSR1, TMPRSS2, BRCA1, BRCA2, PTEN, AR, EGFR, ERBB2, MET, PALB2, RB1

SCIENTIFIC BACKGROUND

Includes 638 DNA-based genes, 22 RNA-based genes for rearrangement analysis and splicing events, microsatellite instability (MSI), tumor mutational burden (TMB), and
homologous recombination deficiency (HRD).

 

 

GENES

638 DNA-based genes, 22 RNA-based genes     DNA: ABL1, ABL2, ACVR1, ACVR1B, ADARB2, AGO1, AGO2, AJUBA, AKT1, AKT2, AKT3, ALB, ALK, ALOX12B, AMER1, ANKRD11, ANKRD26, APC, APLNR, AR, ARAF, ARFRP1, ARHGAP35, ARID1A, ARID1B, ARID2, ARID5B, ASXL1, ASXL2, ATM, ATR, ATRX, ATXN7, AURKA, AURKB, AXIN1, AXIN2, AXL, B2M, BABAM1, BAP1, BARD1, BBC3, BCL10, BCL2, BCL2L1, BCL2L11, BCL2L2, BCL6, BCOR, BCORL1, BCR, BIRC3, BLM, BMPR1A, BRAF, BRCA1, BRCA2, BRD4, BRIP1, BTG1, BTG2, BTK, CALR, CARD11, CARM1, CASP8, CBFB, CBL, CCNB3, CCND1, CCND2, CCND3, CCNE1, CD276, CD70, CD74, CD79A, CD79B, CDC42, CDC73, CDH1, CDH4, CDK12, CDK4, CDK6, CDK7, CDK8, CDKN1A, CDKN1B, CDKN2A, CDKN2B, CDKN2C, CEBPA, CENPA, CHD2, CHD4, CHEK1, CHEK2, CIC, CMTR2, CNTN4, CREBBP, CRKL, CRLF2, CSDE1, CSF1R, CSF3R, CSNK1A1, CTCF, CTLA4, CTNNA1, CTNNB1, CTR9, CUL3, CUL4A, CUX1, CXCR4, CYLD, CYP17A1, CYP19A1, CYP2C19, CYP2D6, CYSLTR2, DAXX, DCUN1D1, DDR1, DDR2, DDX41, DHX15, DICER1, DIS3, DNAJB1, DNMT1, DNMT3A, DNMT3B, DOT1L, DPYD, DROSHA, DUSP4, E2F3, EED, EGFL7, EGFR, EIF1AX, EIF4A2, EIF4E, ELF3, EML4, EMSY, EP300, EPAS1, EPCAM, EPHA3, EPHA5, EPHA7, EPHB1, EPHB4, ERBB2, ERBB3, ERBB4, ERCC1, ERCC2, ERCC3, ERCC4, ERCC5, ERF, ERG, ERRFI1, ESR1, ETAA1, ETS1, ETV1, ETV4, ETV5, ETV6, EWSR1, EZH1, EZH2, EZR, FAM175A, FAM46C, FAM58A, FANCA, FANCC, FANCD2, FANCE, FANCF, FANCG, FANCI, FANCL, FAS, FAT1, FBXW7, FGF1, FGF10, FGF12, FGF14, FGF19, FGF2, FGF23, FGF3, FGF4, FGF5, FGF6, FGF7, FGF8, FGF9, FGFR1, FGFR2, FGFR3, FGFR4, FH, FLCN, FLI1, FLT1, FLT3, FLT4, FOXA1, FOXF1, FOXL2, FOXO1, FOXP1, FRS2, FUBP1, FYN, GAB1, GAB2, GABRA6, GATA1, GATA2, GATA3, GATA4, GATA6, GEN1, GID4, GLI1, GNA11, GNA13, GNAQ, GNAS, GNB1, GPR124, GPS2, GREM1, GRIN2A, GRM3, GSK3B, H3F3A, H3F3B, H3F3C, HDAC1, HGF, HIST1H1C, HIST1H2BD, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J, HIST2H3A, HIST2H3C, HIST2H3D, HIST3H3, HLA-A, HLA-B, HLA-C, HNF1A, HNRNPK, HOXB13, HRAS, HSD3B1, HSP90AA1, ICOSLG, ID3, IDH1, IDH2, IFNGR1, IGF1, IGF1R, IGF2, IKBKE, IKZF1, IL10, IL7R, INHA, INHBA, INPP4A, INPP4B, INPPL1, INSR, IRF2, IRF4, IRS1, IRS2, JAK1, JAK2, JAK3, JUN, KAT6A, KBTBD4, KDM5A, KDM5C, KDM6A, KDR, KEAP1, KEL, KIF5B, KIT, KLF4, KLF5, KLHL6, KMT2A, KMT2B, KMT2C, KMT2D, KMT5A, KNSTRN, KRAS, LAMP1, LATS1, LATS2, LMO1, LRP1B, LTK, LYN, LZTR1, MAD2L2, MAGI2, MALT1, MAP2K1, MAP2K2, MAP2K4, MAP3K1, MAP3K13, MAP3K14, MAP3K4, MAPK1, MAPK3, MAPKAP1, MAX, MCL1, MDC1, MDM2, MDM4, MED12, MEF2B, MEN1, MET, MGA, MITF, MLH1, MLLT1, MLLT3, MPL, MRE11A, MSH2, MSH3, MSH6, MSI1, MSI2, MST1, MST1R, MTAP, MTOR, MUTYH, MYB, MYC, MYCL, MYCN, MYD88, MYOD1, NAB2, NADK, NBN, NCOA3, NCOR1, NEGR1, NF1, NF2, NFE2L2, NFKBIA, NKX2-1, NKX3-1, NOTCH1, NOTCH2, NOTCH3, NOTCH4, NPM1, NRAS, NRG1, NSD1, NT5C2, NTHL1, NTRK1, NTRK2, NTRK3, NUF2, NUP93, NUTM1, OPCML, P2RY8, PAK1, PAK3, PAK7, PALB2, PARK2, PARP1, PARP2, PARP3, PAX3, PAX5, PAX7, PAX8, PBRM1, PD-1, PD-L1, PD-L2, PDGFRA, PDGFRB, PDK1, PDPK1, PGBD5, PGR, PHF6, PHOX2B, PIGA, PIK3C2B, PIK3C2G, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIM1, PLCG2, PLK2, PMAIP1, PMS1, PMS2, PNRC1, POLD1, POLE, POT1, PPARG, PPM1D, PPP2R1A, PPP2R2A, PPP4R2, PPP6C, PRDM1, PRDM14, PREX2, PRKAR1A, PRKCI, PRKD1, PRKDC, PRSS8, PTCH1, PTEN, PTP4A1, PTPN11, PTPRD, PTPRN2, PTPRS, PTPRT, QKI, RAB35, RAC1, RAC2, RAD21, RAD50, RAD51, RAD51B, RAD51C, RAD51D, RAD52, RAD54L, RAF1, RANBP2, RARA, RASA1, RB1, RBM10, RECQL, RECQL4, REL, REST, RET, RFWD2, RHEB, RHOA, RICTOR, RIT1, RNF43, ROS1, RPS6KA4, RPS6KB1, RPS6KB2, RPTOR, RRAGC, RRAS, RRAS2, RSPO2, RTEL1, RUNX1, RUNX1T1, RXRA, RYBP, SCG5, SDC4, SDHA, SDHAF2, SDHB, SDHC, SDHD, SERPINB3, SERPINB4, SESN1, SESN2, SESN3, SETBP1, SETD2, SETDB1, SF3B1, SGK1, SH2B3, SH2D1A, SHOC2, SHQ1, SLC34A2, SLFN11, SLIT2, SLX4, SMAD2, SMAD3, SMAD4, SMARCA2, SMARCA4, SMARCB1, SMARCD1, SMARCE1, SMC1A, SMC3, SMO, SMYD3, SNCAIP, SNTG2, SOCS1, SOS1, SOX10, SOX17, SOX2, SOX9, SPEN, SPOP, SPRED1, SPRTN, SPTA1, SRC, SRSF2, STAG1, STAG2, STAT3, STAT4, STAT5A, STAT5B, STK11, STK19, STK40, SUFU, SUZ12, SYK, TAF1, TAP1, TAP2, TBX3, TCEB1, TCF3, TCF7L2, TEK, TERT, TET1, TET2, TFE3, TFRC, TGFBR1, TGFBR2, TIPARP, TMEM127, TMPRSS2, TNFAIP3, TNFRSF14, TOP1, TOP2A, TP53, TP53BP1, TP63, TPMT, TRAF2, TRAF7, TRIP13, TSC1, TSC2, TSHR, TYRO3, U2AF1, UGT1A1, UPF1, USP8, VEGFA, VHL, VTCN1, WHSC1, WHSC1L1, WISP3, WT1, WWTR1, XIAP, XPO1, XRCC2, YAP1, YES1, ZBTB2, ZBTB7A, ZFHX3, ZNF217, ZNF703, ZNRF3, ZRSR2     RNA: ALK, ROS1, RET, FGFR1, FGFR2, FGFR3, NTRK1, NTRK2, NTRK3, BRAF, NRG1, EWSR1, TMPRSS2, BRCA1, BRCA2, PTEN, AR, EGFR, ERBB2, MET, PALB2, RB1
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